Abbott
Accent
acclaim
ACD
acid
acid green
acid yellow
acqua
acrid
ACS
adage
Add
adhere
admire
adrenal
aero
ajinomoto
al-
alba
alcohols
aldehydes
aldrich
all
allay
allegiance
allegra
allergen
allie
ally
amaranth
amaze
ambush
amen
amps
analogue 4
android
anis
anti-Stress
antitussive
apex
apgpr
apollo
applaud
apron
aqua
aquarius
argent
aria
arrow
ars
arson
artic
artist
aspartate residue
aurora
aurum
Austin
authority
aztec
b+
balance
banner
Bantu
barone
baroque
barrage
barrels
barricade
bartman
bart simpson
basket
bazooka
beast
benelux
benet
Benin
beret
bernice
betula
big dipper
big f
bim
biocide
biogas
bionic
biscuits
blackjack
blast
blizzard
bloom
blow
blue mist
blue star
boldin
bolero
Bordeaux
bore
borneo
boro
bridal
brigade
brilliant blue
brimstone
briton
britten
bronica
broom
bros
brown dots
brush-off
bump
but
bute
but one
butter yellow
c-
c+
cabral
caddy
cadillac
california sunshine
calypso
cameo
Can
can
candy
cantor
cantril
capture
carbohydrate fragment vi
carbon-14
carcinogen
cardenal
carmine
carol
carrie
cartwheels
cascade
cascade yellow
cat
catharine
caviar
cecil
celeste
cet
CFB
chaps
charlie
check
cherry top
chess
chief
chinon
Cho
chocolate chips
chrome
cid
cinnamon
cit
citation
classic
clearlight
Clout
coca
cochineal
cocktail
coke
cola
colt
combat
comital
command
commit
commodore
compass
compendium
compound 6
compound 9
concise
Condition
confront
cont
contact lens
control
coral
coronal
corsair
Cortes
corti
co-trimoxazole
counter
crack
crackdown
crap
cream of tartar
crinan
crispin
crossbow
crossfire
croton
cruiser
crunch
crystal
cs+
ctp
cub
cuban
cubes
cultivate
cum
cupcakes
curio
custodial
Cyclone
cyclones
cyclops
cymen
cys radical
cytochromes
dakar
dams
dart
Dec
DEG
demon
developer A
diadem
dial
Dialog
diamant
diamond
Diane
diano
dictate
dien
digoxin ester derivative
discus
discuss
dispatch
diurnal
dixon
DNS
dollies
dolly
domes
dona
dorm
doyle
dragnet
drago
dragon
dreamer
duet
dump
duna
dur
duran
duration
dust
dynamite
dynamos
eau
eden
Efron
elan
electron
eleven
emery
emotion
encore
enforcer
Ensign
equal
equity
erase
ergot
eros
escort
essex
Estate
eston
excel
excelsior
exter
f+
Fatal
fer
fertiliser
fertilizer
fertilizers
fifty
Final
finesse
fitton
flair
flake
Flamenco
flats
flex
Formal
fortress
foxy
fraction
free acid
freeze
frogs
frontal
fulfill
fundal
fur
furore
fury
galecron
gamma
gastro
gaucho
geigy
german
germania
girl
glean
glide
glutamate residue
glycine residue
gmp residue
golan
goldwater
goon
gradual
greenies
grenade
guardian
hairy
hall
hallucinogen
harman
harmony
harness
harry
hasp
haus
Hearts
heaven
heavenly blue
hell
hemel
henna
henning
herald
Him
His
histidine side-chain
hoca
Horizon
huber
hydro
hydrogen atoms
Ice
icon
imperator
in-
integrin
intense blue
isoform
It
Its
IUPAC
jolt
juice
Jumbo
junk
kato
kava
kendrick
kestrel
kosmos
kudos
label
label red
lady
lake
lamar
laser
lasso
lauren
lauro
Lawson
lds 751 cation
lead
lead-in
leader
leaf
lecithins
Letter
light yellow
lilo
lime
line
Line rider
linton
lipid fragment
liquid
liquid hydrogen
liquorice
lock-on
logic
logos
loram
lost
lotion
#LSD http://www.youtube.com/watch?v=HCCjv2OiTxE
LTD
lumen
luminal
machete
magenta
magister
mal
male
malo
MAN
MAP
mappin
marshal
marshall
mascot
matador
Match
Mauve
mean green
meconium
medina
megaphone
mendel
merit
messel
methionine hydroxy analog
methionine side-chain
method of acid
metric
metro
microdots
mighty
milton
miracle
mirage
mist
mistral
MIT
mita
mitac
modus
moment
momentum
monarch
monolith
morena
morin
morphia
mosul
moxie
moxon
muse
mustang
mustard
name not available
navan
neston
Neuronal
neutron
nevin
nexus
nicorette
nida
nina
no-
nocturne
nodular
No Name
no name available
none
non-german
norton
nostril
nucleoside diphosphate
nucleoside triphosphate
octave
oil red
oliver
opal
Optimal
oral
Oranges
orbit
organon
origen
orion
oro
orthogonal
# Others
outflank
ox
p-
panam
pancho
panos
parenteral
parkin
Parks
parol
pasa
pask
pay-off
peace
peaches
pearly gates
pegasus
pendine
penicillin calcium
penicillins
pensive
Penta
pentium
penton
peregrine
persian
pesos
peyote
phenylalanine residue
photon
picket
pinnacle
pip
piper
#piper seems to be a real structure (?)
pipes
pira
pirate
pits
plata
pledge
plenum
plexiglas
pol
polo
polythene
portal
positron
posse
pounce
prean
predate
prefix
prelude
primal
prism
probate
probiotic
Prompt
Prone
props
prostaglandin
Protect
proton
prowl
pseudo
purple haze
purple red
pyramid
pyro
pyrophosphate 2-
quark
quasar
quicksilver
quine
racemic mixture
racer
radar
radio
raiser
ramp
re-
reagent
reconcile
recruit
redeem
red shield
redskin
refine
Refusal
regent
Region
Relax
Relaxant
repel
restful
result
Retard
retinal
rhymed
ribena
RIO
ripcord
rival
rock
rodinal
Rogue
Roses
rotate
rotax
roundup
royal blue
RSS
rubber
rufus
rugby
saber
sal
salen
Saline
salix
salt
salut
salvo
sandal
sandalwood oil
saturn
scapes
scimitar
scorch
scourge
scout
scuffle
secondary aliphatic amine
sem group
senior
septa
serc
serenade
serpentine
sheets
sherman
sherpa
siddiqui
silber
silence
Simeon
singular
sinton
smack
smash
smear
smokeless
snip
sniper
snort
snorts
snout
snow
sojourn
solis
solo
solon
sonata
Sooner
soup
speed
spinnaker
spirit
spoonies
spotlight
sprinkle
sprint
spurge
stampede
star
stardust
steam
stearn
stein
steward
stipend
stirrup
St. Joseph
storm
strawberry fields
strike
stuff
stuntman
subdue
sublimate
Sugar
sugar lump
sulla
sumatran
summit
sunshine
supergrass
sure shot
surfer
suspend
sword
sylvan
t-
Tabloid
TABS
tag
tame
Tandem
Tao
tara
tarot
tartar
task
tasmin
tattoo
tau
tempo
terminal dimethyl
terminator
tetra
tetrachloride
tetrapeptide analog
the hawk
thein
thien
Thx
tilt
tindal
ting
tinsel
tional
tip-off
titan
titania
titus
ToDay
toke
tol
tomahawk
tonal
toot
tora
torque
torus
trails
tranquil
Transit
triad
trianon
tribute
trigger
trim
trippers
triton
trp radical
tsar
tuareg
tulip
tumor necrosis factor
twist
tyr radical
tyr radical cation
Uniroyal
UNKNOWN
ural
vacate
valid
Vanilla
vanquish
vena
verdict
vermin
vertex
vigil
vinegar
vips
vitamin
voir
voltage
wake-up
Wander
water for injection
water on
waters
wedding bells
wedges
wellcome
whack
whip
white light
window pane
wormwood
Yellow
yellows
ZEN
zeos
Zip
zodiac
condition
conditions
control
fraction
German
Germans
Hall
liquid
result
results
THE
carrie
counter
carries
laser
label
check
none
portal
region
letter
valid
formal
cantor
equal
compendium
cocktail
speed
epoxy
carbon-carbon
NMO
lin
Aad
acetal
G-I
G-II
O-acetal
guo
alcohol
lau
lactone
peroxy
spirolactone
arial
azo
water
水
蒸汽
蒸気
冰
氷
Lin
Pro
PEEP
STD
TVA
today
Pas
Stears
Stim
diol
Tri
Pan
Ben
Guo
Resi
DIAL
AMPS
-IO
Ino
ammo
3PP
Doc
Dia
Lau
Pred
mutagen
Fur
Jam
DUST
CONT
versed
Ser. No
Abe
gon
ACID
ANON
BABE
BASF
BLED
CAPE
CAPS
CATO
CLAP
CONT
CROWN
CTAB
DEAN
DELTA
DIAL
DICO
DINO
DOPE
DUST
EDAM
EDMA
FAST
FDUR
GOLD
HEXA
HIBA
HIST
HOME
IMAC
IODO
IRON
ISIS
KERB
LILO
LYCO
MARK
MINO
MITO
MOCA
MOLD
MOON
MOPA
MOPE
MOPS
MPEG
MTEP
MUSE
NAME
NANA
NAPE
NICO
NIDA
NIMO
OPUS
OUST
PANI
PARA
PEEP
PENT
PERC
PERK
PETE
POPE
PPDA
PRED
PROB
PUMA
RAMP
REAL
SAGA
TABS
TAME
TEMPO
TRIS
USAN
VIII
XIII
XVII
XXIII
XXVIII
crank
impulse
armor
avatar
calcined
ISDN
PEEK
optimizer
soda
first rate
phaser
Impulse
Rhein
non-salt
non- salt
# Acronyms that we might not want to convert (e.g. ROS can be reactive oxygen species), even when acronyms are on.
# Based on the Biocreative CHEMDNER 2013 challenge training data
AAA
AAB
AAG
AAT
ABA
ABC
ACC
ACP
ACT
ADC
ADH
ADM
ADR
ADT
AEA
AED
AIC
AMD
AMP
APA
APP
ARC
ASA
ASE
BAL
BAT
BBB
BCA
BCG
BCP
BCR
BHT
BLM
BMC
BMP
BNP
BOY
BTX
CAE
CAM
CAP
CBD
CBS
CCL
CDA
CIA
CLA
CNC
COX
CPA
CPP
CSC
CTA
CTM
DAO
DBH
DBI
DBP
DCE
DCM
DDI
DDP
DDS
DEA
DEP
DIC
DMS
DMT
DNP
DOX
DPP
DSM
DSP
DSS
DST
DTC
DXA
EAP
ECM
EDC
EMT
EPA
ETS
FAP
FCM
FCT
FDA
FDC
FDP
FFA
FLP
FTC
FTP
GPC
GTP
HCE
HCT
HMG
HMM
HPA
HSC
HSM
HSP
ICI
ICT
IDA
IDC
IMD
INA
IOP
ISI
ITC
ITR
LED
LEV
LMB
LMS
LPG
LPP
LTG
MBC
MCI
MCP
MDD
MDR
MEK
MES
MET
MGL
MHT
MIC
MMP
MOF
MSA
MSH
MSM
MTC
MTD
MYC
NAG
NAM
NET
NIS
NMF
NOP
NPC
NTP
OCT
PAB
PAF
PAG
PAL
PAM
PCA
PCB
PCE
PCL
PCP
PDA
PDB
PDP
PDT
PEF
PEP
PFP
PIM
PIO
PLL
PLM
PLP
PLY
POP
PPA
PPD
PPE
PPG
PPI
PPO
PRA
PRD
PRP
PSP
PTM
PTP
PTT
PUD
PVA
RAD
RAS
RCC
RDX
ROC
ROS
RTP
SAM
SCN
SHA
SLM
SMP
SPM
SSD
SSH
STS
TAC
TAM
TAR
TCC
TDS
TEM
TEN
TFT
THD
TIC
TMS
TPA
TPM
TRP
TSC
TSH
TTA
UPP
# Some atomic symbols that are also common words:
In
As
At
No
Is
Co
Re
Pt
Pa
nucleotide polymorphism
meth
coord
anthon
Germain
Cobo
Prodan
advantage S
factor s
# can also mean 1,1,2-trichloroethane
B-tri
Des
inhalable
Gal
bertalane
bertalene
Kabat
Italo
Milagro
glycoprotein
